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GrainGenes Marker Report: k01276

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Locus	k01276
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal39a03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = C/G SNP structure (UNICODE) = ACTCAAGCTTSCATTTTTTCT Parent 1 SNP sequence = ACTCAAGCTTCCATTTTTTCT Parent 2 SNP sequence = ACTCAAGCTTGCATTTTTTCT SNP = C/A SNP structure (UNICODE) = CTTTCTCTGAMGAAGAAACAA Parent 1 SNP sequence = CTTTCTCTGACGAAGAAACAA Parent 2 SNP sequence = CTTTCTCTGAAGAAGAAACAA SNP = T/C SNP structure (UNICODE) = GTGGTATATTYTCCAAACTCA Parent 1 SNP sequence = GTGGTATATTTTCCAAACTCA Parent 2 SNP sequence = GTGGTATATTCTCCAAACTCA SNP structure (UNICODE) = TCTCACAATCSCTGATATGTT Parent 1 SNP sequence = TCTCACAATCCCTGATATGTT Parent 2 SNP sequence = TCTCACAATCGCTGATATGTT SNP = T/A SNP structure (UNICODE) = ATGCACATTTWCCGTGCGCGC Parent 1 SNP sequence = ATGCACATTTTCCGTGCGCGC Parent 2 SNP sequence = ATGCACATTTACCGTGCGCGC SNP = A/G SNP structure (UNICODE) = ATTGTCGGGGRAAAATGTATG Parent 1 SNP sequence = ATTGTCGGGGAAAAATGTATG Parent 2 SNP sequence = ATTGTCGGGGGAAAATGTATG
Probe for Locus	baal39a03
Locus	k01276
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = adenine phosphoribosyltransferase form 2 [Oryza sativa (indica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAGCATGGCCCTAATTTTCG Right 5' - GAACCCGATGAGGACAAAGA
Sequence	BJ476957
PCR size	361