GrainGenes Marker Report: k01288
Locus
k01288
Type
SNP
Chromosome
3H
Map
Hv-HNxH602-3H 131.8
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
baal39a19
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 29 ] SNP = C/T SNP structure (UNICODE) = GTAGGGTCTCYTCTTGGGCAG Parent 1 SNP sequence = GTAGGGTCTCCTCTTGGGCAG Parent 2 SNP sequence = GTAGGGTCTCTTCTTGGGCAG SNP = C/G SNP structure (UNICODE) = TGACGGGGATSGCGGGAGGCC Parent 1 SNP sequence = TGACGGGGATCGCGGGAGGCC Parent 2 SNP sequence = TGACGGGGATGGCGGGAGGCC SNP structure (UNICODE) = GACACTCTGASTCTCAACCGC Parent 1 SNP sequence = GACACTCTGACTCTCAACCGC Parent 2 SNP sequence = GACACTCTGAGTCTCAACCGC SNP = A/C SNP structure (UNICODE) = TGCCGCTCCGMGCCATCATCA Parent 1 SNP sequence = TGCCGCTCCGAGCCATCATCA Parent 2 SNP sequence = TGCCGCTCCGCGCCATCATCA SNP structure (UNICODE) = TCATCAGGTTYGCGCAGGAGC Parent 1 SNP sequence = TCATCAGGTTCGCGCAGGAGC Parent 2 SNP sequence = TCATCAGGTTTGCGCAGGAGC SNP = G/C SNP structure (UNICODE) = ACCTCACCTCSGACATGCACG Parent 1 SNP sequence = ACCTCACCTCGGACATGCACG Parent 2 SNP sequence = ACCTCACCTCCGACATGCACG SNP = G/T SNP structure (UNICODE) = GGGCAGGTCCKCCAGGCACCT Parent 1 SNP sequence = GGGCAGGTCCGCCAGGCACCT Parent 2 SNP sequence = GGGCAGGTCCTCCAGGCACCT SNP structure (UNICODE) = TGCACGCGAASGACTGGGACT Parent 1 SNP sequence = TGCACGCGAACGACTGGGACT Parent 2 SNP sequence = TGCACGCGAAGGACTGGGACT
Probe for Locus
baal39a19
Locus
k01288
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = P0638D12.11 [Oryza sativa (japonica cultivar-group)] dbj BAB55503.1 P0638D12.11 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - CCAAGGTGCTTCAGCTTTCT
Right 5' - TGCAAAGCAGTCCAGATGAC
Sequence
AV936596
PCR size
387
GrainGenes Marker Report: k01288
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