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GrainGenes Marker Report: k01297

Locus	k01297
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 97.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal36g05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/A SNP structure (UNICODE) = ACCACCCAGAWTATATAATCC Parent 1 SNP sequence = ACCACCCAGATTATATAATCC Parent 2 SNP sequence = ACCACCCAGAATATATAATCC SNP = G/T SNP structure (UNICODE) = ACTAGCACTAKCACTAGCACT Parent 1 SNP sequence = ACTAGCACTAGCACTAGCACT Parent 2 SNP sequence = ACTAGCACTATCACTAGCACT SNP = C/G SNP structure (UNICODE) = GATGTATCTASACACGTTTTA Parent 1 SNP sequence = GATGTATCTACACACGTTTTA Parent 2 SNP sequence = GATGTATCTAGACACGTTTTA SNP = G/A SNP structure (UNICODE) = TCATGTACGCRAAGAAAACAG Parent 1 SNP sequence = TCATGTACGCGAAGAAAACAG Parent 2 SNP sequence = TCATGTACGCAAAGAAAACAG
Probe for Locus	baal36g05
Locus	k01297
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Vacuolar ATP synthase subunit d [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGCCTCAGAGAACTCTCCCT Right 5' - CCTCCTATGCCCCAGTGATA
Sequence	BJ476675
PCR size	357