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GrainGenes Marker Report: k01308

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Locus	k01308
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 81.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal40p07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = CCATCGAGTARGGTGAATCGA Parent 1 SNP sequence = CCATCGAGTAAGGTGAATCGA Parent 2 SNP sequence = CCATCGAGTAGGGTGAATCGA SNP = T/C SNP structure (UNICODE) = GGCAAAAGAAYTGAAGAAACT Parent 1 SNP sequence = GGCAAAAGAATTGAAGAAACT Parent 2 SNP sequence = GGCAAAAGAACTGAAGAAACT SNP = C/T SNP structure (UNICODE) = ACCCTGCATGYAAGTCACCGG Parent 1 SNP sequence = ACCCTGCATGCAAGTCACCGG Parent 2 SNP sequence = ACCCTGCATGTAAGTCACCGG SNP = G/A SNP structure (UNICODE) = CCATCTTACCRCCTGCATCGA Parent 1 SNP sequence = CCATCTTACCGCCTGCATCGA Parent 2 SNP sequence = CCATCTTACCACCTGCATCGA
Probe for Locus	baal40p07
Locus	k01308
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = B1189A09.35 [Oryza sativa (japonica cultivar-group)] dbj BAB64790.1 P0701D05.4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAGTTTGATGACCCCGAGAA Right 5' - CAGCCGGAATTACTTTGACC
Sequence	BJ477268
PCR size	376