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GrainGenes Marker Report: k01313

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Locus	k01313
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 253.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal39g02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 21 ] SNP = G/T SNP structure (UNICODE) = TCCTTGCTCAKCCTGCCCTTG Parent 1 SNP sequence = TCCTTGCTCAGCCTGCCCTTG Parent 2 SNP sequence = TCCTTGCTCATCCTGCCCTTG SNP = T/A SNP structure (UNICODE) = TTCTGGCCGGWGGTCTTGTCC Parent 1 SNP sequence = TTCTGGCCGGTGGTCTTGTCC Parent 2 SNP sequence = TTCTGGCCGGAGGTCTTGTCC SNP structure (UNICODE) = TTGTCGTTGGWGATGGTGATC Parent 1 SNP sequence = TTGTCGTTGGTGATGGTGATC Parent 2 SNP sequence = TTGTCGTTGGAGATGGTGATC SNP = G/A SNP structure (UNICODE) = ACTTCTCTGCRTCCTGGACCA Parent 1 SNP sequence = ACTTCTCTGCGTCCTGGACCA Parent 2 SNP sequence = ACTTCTCTGCATCCTGGACCA SNP structure (UNICODE) = TCATGTTGTARGCGTAGTTCT Parent 1 SNP sequence = TCATGTTGTAGGCGTAGTTCT Parent 2 SNP sequence = TCATGTTGTAAGCGTAGTTCT SNP structure (UNICODE) = GAGACGTTCARGATACCGTTG Parent 1 SNP sequence = GAGACGTTCAGGATACCGTTG Parent 2 SNP sequence = GAGACGTTCAAGATACCGTTG
Probe for Locus	baal39g02
Locus	k01313
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = non-cell-autonomous heat shock cognate protein 70 [Cucurbita maxima]
Type	PCR
PCR primers	Left 5' - CCAGCATGCATAGACTGGAA Right 5' - AGGCCTCGAAAGGATAGAGC
Sequence	BJ548644
PCR size	483