Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k01319

[Submit comment/correction]

Locus	k01319
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 240.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal40k24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/C SNP structure (UNICODE) = AAGTTCCCATYTGAGTGTCTG Parent 1 SNP sequence = AAGTTCCCATTTGAGTGTCTG Parent 2 SNP sequence = AAGTTCCCATCTGAGTGTCTG Recognized sequence for CAPs locus = CTNAG
Probe for Locus	baal40k24
Locus	k01319
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = kinase associated protein phosphatase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATCGCTTTTTCGCAAACTGT Right 5' - GAATGGCCATATGGTTCCTG
Sequence	BJ476202
PCR size	430