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GrainGenes Marker Report: k01338

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Locus	k01338
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal39m19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = SspI SNP = A/C SNP structure (UNICODE) = AACTATGAATMTTAGACCCTT Parent 1 SNP sequence = AACTATGAATATTAGACCCTT Parent 2 SNP sequence = AACTATGAATCTTAGACCCTT Recognized sequence for CAPs locus = AATATT
Probe for Locus	baal39m19
Locus	k01338
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative tyrosine phosphatase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CGAAGCAAACACAGCAACAT Right 5' - TACCCCCGTATTCCACAAAA
Sequence	BJ544697
PCR size	365