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GrainGenes Marker Report: k01339

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Locus	k01339
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 91.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal3c01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/G SNP structure (UNICODE) = CATCAACACAKTTCAGCAAGA Parent 1 SNP sequence = CATCAACACATTTCAGCAAGA Parent 2 SNP sequence = CATCAACACAGTTCAGCAAGA SNP = G/A SNP structure (UNICODE) = CCACGGTGGGRACGCCGGGGT Parent 1 SNP sequence = CCACGGTGGGGACGCCGGGGT Parent 2 SNP sequence = CCACGGTGGGAACGCCGGGGT SNP = C/G SNP structure (UNICODE) = CGTTGTTGTASGTGAACGCAC Parent 1 SNP sequence = CGTTGTTGTACGTGAACGCAC Parent 2 SNP sequence = CGTTGTTGTAGGTGAACGCAC
Probe for Locus	baal3c01
Locus	k01339
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = senescence-associated family protein [Arabidopsis thaliana] dbj BAA97503.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CAACGGAAAGGGCAAAGATA Right 5' - GAGCAAGGTGCTGGACATCT
Sequence	BJ474526
PCR size	481