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GrainGenes Marker Report: k01344

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Locus	k01344
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 138.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal41i11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = AACCAAATCARATCGGTTACA Parent 1 SNP sequence = AACCAAATCAAATCGGTTACA Parent 2 SNP sequence = AACCAAATCAGATCGGTTACA SNP = G/T SNP structure (UNICODE) = CATCTCTTGTKTACGTACCAT Parent 1 SNP sequence = CATCTCTTGTGTACGTACCAT Parent 2 SNP sequence = CATCTCTTGTTTACGTACCAT SNP = C/G SNP structure (UNICODE) = GCCAGGCTTASATATTTTGGA Parent 1 SNP sequence = GCCAGGCTTACATATTTTGGA Parent 2 SNP sequence = GCCAGGCTTAGATATTTTGGA SNP structure (UNICODE) = ATGTGATTGGKGCTCAACTGA Parent 1 SNP sequence = ATGTGATTGGGGCTCAACTGA Parent 2 SNP sequence = ATGTGATTGGTGCTCAACTGA
Probe for Locus	baal41i11
Locus	k01344
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAL67583.1 unknown protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TCTCGTAGGCCGTAGCTCAT Right 5' - GAAGTTCAGGGAGCTGGACA
Sequence	BJ477463
PCR size	363