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GrainGenes Marker Report: k01353

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Locus	k01353
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 116.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal5j24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = CATGAGTGCGYTGTGTCCTGA Parent 1 SNP sequence = CATGAGTGCGCTGTGTCCTGA Parent 2 SNP sequence = CATGAGTGCGTTGTGTCCTGA Recognized sequence for CAPs locus = GCGC
Probe for Locus	baal5j24
Locus	k01353
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Thiol protease aleurain precursor emb CAA28804.1 aleurain [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - GCAACTGCAAGCAAACACAT Right 5' - GTGAGCAGCAACAAGACCAA
Sequence	AV936684
PCR size	399