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GrainGenes Marker Report: k01358

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Locus	k01358
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 78.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal4a06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 31 ] SNP = G/A SNP structure (UNICODE) = ATTTTCTTTCRGCTCCTTATG Parent 1 SNP sequence = ATTTTCTTTCGGCTCCTTATG Parent 2 SNP sequence = ATTTTCTTTCAGCTCCTTATG SNP = T/C SNP structure (UNICODE) = CGATTTCGATYGCCTTGGGTT Parent 1 SNP sequence = CGATTTCGATTGCCTTGGGTT Parent 2 SNP sequence = CGATTTCGATCGCCTTGGGTT SNP = A/G SNP structure (UNICODE) = CGAGGGCACCRAATCTGCAGT Parent 1 SNP sequence = CGAGGGCACCAAATCTGCAGT Parent 2 SNP sequence = CGAGGGCACCGAATCTGCAGT SNP = G/C SNP structure (UNICODE) = TCTGTTCCACSTCCATGTCGC Parent 1 SNP sequence = TCTGTTCCACGTCCATGTCGC Parent 2 SNP sequence = TCTGTTCCACCTCCATGTCGC SNP structure (UNICODE) = TTATGATCGCSTTGCCTCGGG Parent 1 SNP sequence = TTATGATCGCGTTGCCTCGGG Parent 2 SNP sequence = TTATGATCGCCTTGCCTCGGG SNP = C/T SNP structure (UNICODE) = ATAGCCTGCTYGTTCTGCCTA Parent 1 SNP sequence = ATAGCCTGCTCGTTCTGCCTA Parent 2 SNP sequence = ATAGCCTGCTTGTTCTGCCTA SNP = T/A SNP structure (UNICODE) = CTCCTTCTGGWGATTTTCATT Parent 1 SNP sequence = CTCCTTCTGGTGATTTTCATT Parent 2 SNP sequence = CTCCTTCTGGAGATTTTCATT SNP = A/C SNP structure (UNICODE) = CCATGACAGTMTCCCTTGTCT Parent 1 SNP sequence = CCATGACAGTATCCCTTGTCT Parent 2 SNP sequence = CCATGACAGTCTCCCTTGTCT
Probe for Locus	baal4a06
Locus	k01358
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At5g14140 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGTCACCTCGAATTCAGCAC Right 5' - TAAGCAATGGCATCCAAGG
Sequence	AV935405
PCR size	440