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GrainGenes Marker Report: k01370

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Locus	k01370
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 147.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal4a13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/T SNP structure (UNICODE) = TATCGTATTGWGTGCTTTTCA Parent 1 SNP sequence = TATCGTATTGAGTGCTTTTCA Parent 2 SNP sequence = TATCGTATTGTGTGCTTTTCA SNP = G/T SNP structure (UNICODE) = TTTATCAGCTKTGCATAAGTT Parent 1 SNP sequence = TTTATCAGCTGTGCATAAGTT Parent 2 SNP sequence = TTTATCAGCTTTGCATAAGTT SNP = C/G SNP structure (UNICODE) = GAATGGATGASAACCACGATG Parent 1 SNP sequence = GAATGGATGACAACCACGATG Parent 2 SNP sequence = GAATGGATGAGAACCACGATG SNP = G/A SNP structure (UNICODE) = TACCAGAACARATGTCATTTT Parent 1 SNP sequence = TACCAGAACAGATGTCATTTT Parent 2 SNP sequence = TACCAGAACAAATGTCATTTT
Probe for Locus	baal4a13
Locus	k01370
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol
Type	PCR
PCR primers	Left 5' - CGATTACTCAACGCCCTGAT Right 5' - ACAGCTTTGGCGTTGTTCTT
Sequence	AV935408
PCR size	377