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GrainGenes Marker Report: k01378

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Locus	k01378
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 24.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal6a11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MflI SNP = T/C SNP structure (UNICODE) = TCACCGTGGAYCTCCCGCCCA Parent 1 SNP sequence = TCACCGTGGATCTCCCGCCCA Parent 2 SNP sequence = TCACCGTGGACCTCCCGCCCA Recognized sequence for CAPs locus = RGATCY
Probe for Locus	baal6a11
Locus	k01378
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative soluble acid invertase [Lolium temulentum]
Type	PCR
PCR primers	Left 5' - TAGCTCAGCACCAAAAGCCT Right 5' - CTGCCAGATCGAGAACATCA
Sequence	AV936007
PCR size	352