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GrainGenes Marker Report: k01385

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Locus	k01385
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 34.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal4k16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = T/C SNP structure (UNICODE) = GTAAATCCATYGATTCATGCA Parent 1 SNP sequence = GTAAATCCATTGATTCATGCA Parent 2 SNP sequence = GTAAATCCATCGATTCATGCA Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	baal4k16
Locus	k01385
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Catalase isozyme 2 pir S62697 catalase (EC 1.11.1.6) isoenzyme 2 - barley
Type	PCR
PCR primers	Left 5' - TCGACCACTTGAAACCAACA Right 5' - AATGCTCCCAAGGCTCGT
PCR size	484