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GrainGenes Marker Report: k01387

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Locus	k01387
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal5b15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XhoI SNP = A/G SNP structure (UNICODE) = CTGGAGACTCRAGCAGATGCA Parent 1 SNP sequence = CTGGAGACTCAAGCAGATGCA Parent 2 SNP sequence = CTGGAGACTCGAGCAGATGCA Recognized sequence for CAPs locus = CTCGAG
Probe for Locus	baal5b15
Locus	k01387
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0116K07.11 [Oryza sativa (japonica cultivar-group)] emb CAE02946.2 OSJNBa0014K14.18 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATAGGGAACCATTGCTCCAG Right 5' - CAACCTTTCCAAGATGTGCTC
Sequence	AV936599
PCR size	371