GrainGenes Marker Report: k01389
Locus
k01389
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 53.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
baal5k12
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = T/C SNP structure (UNICODE) = CGACCACACGYGTCCCAGCAG Parent 1 SNP sequence = CGACCACACGTGTCCCAGCAG Parent 2 SNP sequence = CGACCACACGCGTCCCAGCAG Recognized sequence for CAPs locus = CGCG
Probe for Locus
baal5k12
Locus
k01389
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = P450 [Triticum aestivum]
Type
PCR
PCR primers
Left 5' - ATGTTCACCTGACGAAAGCC
Right 5' - CAGCTCTTACTGCCCCAAAG
Sequence
AV936726
PCR size
367
GrainGenes Marker Report: k01389
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