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GrainGenes Marker Report: k01406

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Locus	k01406
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 35.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal4d01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = C/T SNP structure (UNICODE) = AGTTTAAGGCYCCGAAGGTTC Parent 1 SNP sequence = AGTTTAAGGCCCCGAAGGTTC Parent 2 SNP sequence = AGTTTAAGGCTCCGAAGGTTC Recognized sequence for CAPs locus = GGCC SNP = T/G SNP structure (UNICODE) = TGCT--AAGGKCCTTGGATGA Parent 1 SNP sequence = TGCT--AAGGTCCTTGGATGA Parent 2 SNP sequence = TGCTATAAGGGCCTTGGATGA
Probe for Locus	baal4d01
Locus	k01406
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0052O21.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTCGAAGAAACAGCGTGTG Right 5' - GGGACGACAAGCTCAAGAAG
Sequence	BJ474579
PCR size	446