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GrainGenes Marker Report: k01407

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Locus	k01407
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal4f01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 13 ] Restriction enzyme used for CAPS analysis = MvaI SNP = G/- SNP structure (UNICODE) = AAACGCACTCG/-TGGCCCACAC Parent 1 SNP sequence = AAACGCACTCGTGGCCCACAC Parent 2 SNP sequence = AAACGCACTC-TGGCCCACAC SNP = T/A SNP structure (UNICODE) = AAACTCTAAGWTGGGAGACCA Parent 1 SNP sequence = AAACTCTAAGTTGGGAGACCA Parent 2 SNP sequence = AAACTCTAAGATGGGAGACCA SNP = A/N SNP structure (UNICODE) = CTCGATTGGCA/NTGGGATCAAC Parent 1 SNP sequence = CTCGATTGGCATGGGATCAAC Parent 2 SNP sequence = CTCGATTGGCNTGGGATCAAC
Probe for Locus	baal4f01
Locus	k01407
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CGCTGGAAGAAATATCACCAC Right 5' - CAGAATGATGGCGTCTGGTA
Sequence	AV935473
PCR size	357