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GrainGenes Marker Report: k01424

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Locus	k01424
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 253.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal5i19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = TATAACCCGGRGAGAGATAGA Parent 1 SNP sequence = TATAACCCGGGGAGAGATAGA Parent 2 SNP sequence = TATAACCCGGAGAGAGATAGA SNP = G/T SNP structure (UNICODE) = CACGCACATGKCCCTGTTCAA Parent 1 SNP sequence = CACGCACATGGCCCTGTTCAA Parent 2 SNP sequence = CACGCACATGTCCCTGTTCAA SNP = A/T SNP structure (UNICODE) = ATTATACCTGWAATTCAAGGA Parent 1 SNP sequence = ATTATACCTGAAATTCAAGGA Parent 2 SNP sequence = ATTATACCTGTAATTCAAGGA SNP structure (UNICODE) = TCTTTGTTGGRATTACACCCA Parent 1 SNP sequence = TCTTTGTTGGGATTACACCCA Parent 2 SNP sequence = TCTTTGTTGGAATTACACCCA
Probe for Locus	baal5i19
Locus	k01424
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0084K01.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGATGAGCAATTATCGTCGG Right 5' - AGCCCATAGGTCTTCGGTTT
Sequence	AV936701
PCR size	360