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GrainGenes Marker Report: k01435

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Locus	k01435
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 122.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal5e24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = C/T SNP structure (UNICODE) = TGAAGCGGATYGATCTAATGG Parent 1 SNP sequence = TGAAGCGGATCGATCTAATGG Parent 2 SNP sequence = TGAAGCGGATTGATCTAATGG Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	baal5e24
Locus	k01435
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = WD-40 repeat family protein [Arabidopsis thaliana] gb AAK82560.1 AT3g13340/MDC11_13 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCAGCTAAAAGCTAAGCAACG Right 5' - CTTCTTCCAGTCCATGCGTC
Sequence	BJ545375
PCR size	455