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GrainGenes Marker Report: k01445

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Locus	k01445
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 279.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal9n02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/T SNP structure (UNICODE) = ACTCCAGAGGKGCTCGCCCTT Parent 1 SNP sequence = ACTCCAGAGGGGCTCGCCCTT Parent 2 SNP sequence = ACTCCAGAGGTGCTCGCCCTT SNP = A/C SNP structure (UNICODE) = GCGAGAAAGAMAAGGTGTTTC Parent 1 SNP sequence = GCGAGAAAGAAAAGGTGTTTC Parent 2 SNP sequence = GCGAGAAAGACAAGGTGTTTC SNP structure (UNICODE) = GCGGGCTCAGKGAACGCGTCC Parent 1 SNP sequence = GCGGGCTCAGGGAACGCGTCC Parent 2 SNP sequence = GCGGGCTCAGTGAACGCGTCC SNP = T/G SNP structure (UNICODE) = ATGAGCTACGKGCGGGCTGGC Parent 1 SNP sequence = ATGAGCTACGTGCGGGCTGGC Parent 2 SNP sequence = ATGAGCTACGGGCGGGCTGGC SNP = G/A SNP structure (UNICODE) = ACTCCGGGGARACATGGAATA Parent 1 SNP sequence = ACTCCGGGGAGACATGGAATA Parent 2 SNP sequence = ACTCCGGGGAAACATGGAATA
Probe for Locus	baal9n02
Locus	k01445
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB01847.1 contains similarity to 30s ribosomal protein s1~gene_id:MYM9.4
Type	PCR
PCR primers	Left 5' - CGCTTTAATGGTGTGACCCT Right 5' - CAGCAGCAACTGGAACTACG
Sequence	AV937219
PCR size	350