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GrainGenes Marker Report: k01469

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Locus	k01469
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 96.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal9o21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/T SNP structure (UNICODE) = GTGTGTATCCWCCGTCAGTTC Parent 1 SNP sequence = GTGTGTATCCACCGTCAGTTC Parent 2 SNP sequence = GTGTGTATCCTCCGTCAGTTC SNP = G/T SNP structure (UNICODE) = GCGTGCCACCKACGTTGAGGC Parent 1 SNP sequence = GCGTGCCACCGACGTTGAGGC Parent 2 SNP sequence = GCGTGCCACCTACGTTGAGGC SNP = T/C SNP structure (UNICODE) = TTGAGGCTGGYGAATCCATCT Parent 1 SNP sequence = TTGAGGCTGGTGAATCCATCT Parent 2 SNP sequence = TTGAGGCTGGCGAATCCATCT
Probe for Locus	baal9o21
Locus	k01469
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative NAM (no apical meristem) protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TATGAACTGGCCATGTGGAA Right 5' - CTGCGCTTCAGTTAGGTGTG
Sequence	AV937243
PCR size	397