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GrainGenes Marker Report: k01490

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Locus	k01490
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 245.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal8e24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/C SNP structure (UNICODE) = GGGGCTCTCAYGGATGTCGGT Parent 1 SNP sequence = GGGGCTCTCATGGATGTCGGT Parent 2 SNP sequence = GGGGCTCTCACGGATGTCGGT SNP = A/C SNP structure (UNICODE) = TCAAGTTTCCMCTAGAGGCCC Parent 1 SNP sequence = TCAAGTTTCCACTAGAGGCCC Parent 2 SNP sequence = TCAAGTTTCCCCTAGAGGCCC
Probe for Locus	baal8e24
Locus	k01490
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGTTCTTTTCCAATCGAGG Right 5' - AAGAGACCCTCGTCAACCTG
Sequence	AV936915
PCR size	378