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GrainGenes Marker Report: k01927

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Locus	k01927
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 253.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags10e02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = C/T SNP structure (UNICODE) = CGTTGGTGCTYGCGTACGTCA Parent 1 SNP sequence = CGTTGGTGCTCGCGTACGTCA Parent 2 SNP sequence = CGTTGGTGCTTGCGTACGTCA Recognized sequence for CAPs locus = CGCG
Probe for Locus	bags10e02
Locus	k01927
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative actin depolymerizing factor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGATTTTCCAGCAACTGAA Right 5' - GGTCCAAACTTGCATGGTCT
Sequence	BM370247
PCR size	367