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GrainGenes Marker Report: k01939

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Locus	k01939
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags10e03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = ATAATCAGTCRACCAAAATTG Parent 1 SNP sequence = ATAATCAGTCAACCAAAATTG Parent 2 SNP sequence = ATAATCAGTCGACCAAAATTG Recognized sequence for CAPs locus = TCGA
Probe for Locus	bags10e03
Locus	k01939
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein arginine N-methyltransferase, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAAACAATACAGCCGAGCGT Right 5' - TGGAGGATGTTTTCCCTCTG
Sequence	AV917521
PCR size	369