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GrainGenes Marker Report: k01963

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Locus	k01963
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 277.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags10e13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = A/G SNP structure (UNICODE) = ATGTAACTCARTCCGCATCAT Parent 1 SNP sequence = ATGTAACTCAATCCGCATCAT Parent 2 SNP sequence = ATGTAACTCAGTCCGCATCAT SNP = A/T SNP structure (UNICODE) = TTTGTTTTCAWTCACATTCCA Parent 1 SNP sequence = TTTGTTTTCAATCACATTCCA Parent 2 SNP sequence = TTTGTTTTCATTCACATTCCA SNP structure (UNICODE) = CTCATCATCTRGTTCTCTACA Parent 1 SNP sequence = CTCATCATCTAGTTCTCTACA Parent 2 SNP sequence = CTCATCATCTGGTTCTCTACA SNP structure (UNICODE) = GAAAGTACATRATTTGAGTGT Parent 1 SNP sequence = GAAAGTACATAATTTGAGTGT Parent 2 SNP sequence = GAAAGTACATGATTTGAGTGT SNP = C/G SNP structure (UNICODE) = GGATGCCTCASGCTTGTCGAT Parent 1 SNP sequence = GGATGCCTCACGCTTGTCGAT Parent 2 SNP sequence = GGATGCCTCAGGCTTGTCGAT SNP = T/G SNP structure (UNICODE) = CCATTTTGCAKACAGAAACAT Parent 1 SNP sequence = CCATTTTGCATACAGAAACAT Parent 2 SNP sequence = CCATTTTGCAGACAGAAACAT
Probe for Locus	bags10e13
Locus	k01963
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = silencing group B protein [Zea mays]
Type	PCR
PCR primers	Left 5' - TCATCGCACTTGCGAGTTTA Right 5' - GATCGGGAACATTTCCACTG
Sequence	AV919148
PCR size	350