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GrainGenes Marker Report: k01968

Locus	k01968
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 101.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags11h12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = A/T SNP structure (UNICODE) = TATGATAGCAWATTGCTTGTA Parent 1 SNP sequence = TATGATAGCAAATTGCTTGTA Parent 2 SNP sequence = TATGATAGCATATTGCTTGTA SNP = T/C SNP structure (UNICODE) = GCAACTAGTCYTCTTTATGAT Parent 1 SNP sequence = GCAACTAGTCTTCTTTATGAT Parent 2 SNP sequence = GCAACTAGTCCTCTTTATGAT SNP structure (UNICODE) = AATGCTCAGAWTTTCCGTAAG Parent 1 SNP sequence = AATGCTCAGAATTTCCGTAAG Parent 2 SNP sequence = AATGCTCAGATTTTCCGTAAG SNP structure (UNICODE) = GGCTAGGCCTYGAAGCGCTTG Parent 1 SNP sequence = GGCTAGGCCTTGAAGCGCTTG Parent 2 SNP sequence = GGCTAGGCCTCGAAGCGCTTG
Probe for Locus	bags11h12
Locus	k01968
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein T10K17.100 - Arabidopsis thaliana emb CAB67617.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCGAATTGCTCCTCTGCTTT Right 5' - ACATGGACGAGCACACTGAG
Sequence	BQ663165
PCR size	392