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GrainGenes Marker Report: k01980

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Locus	k01980
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 199.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags11i04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = G/A SNP structure (UNICODE) = GATCATCAACRTACTCAAACT Parent 1 SNP sequence = GATCATCAACGTACTCAAACT Parent 2 SNP sequence = GATCATCAACATACTCAAACT Recognized sequence for CAPs locus = GTAC
Probe for Locus	bags11i04
Locus	k01980
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 40S ribosomal protein S15A (RPS15aA) [Arabidopsis thaliana] ref NP_200793.1 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGACACCGAGCCTTGTGAAC Right 5' - ACCAGCAGCGTCTCATCTTT
Sequence	AV917787
PCR size	467