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GrainGenes Marker Report: k02033

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Locus	k02033
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 9.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags12l21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = T/C SNP structure (UNICODE) = TCCTTGCATCYGTCTCACCAT Parent 1 SNP sequence = TCCTTGCATCTGTCTCACCAT Parent 2 SNP sequence = TCCTTGCATCCGTCTCACCAT Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	bags12l21
Locus	k02033
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNA methyltransferase DMT106 [Zea mays]
Type	PCR
PCR primers	Left 5' - TGCAAAACAAGAGCGAGCTA Right 5' - GCTTTGCAAAAGATGGGAGA
Sequence	AV834514
PCR size	374