Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02044

[Submit comment/correction]

Locus	k02044
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 225
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags12i02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/A SNP structure (UNICODE) = CGACTCTATGRGCAGCCACCG Parent 1 SNP sequence = CGACTCTATGGGCAGCCACCG Parent 2 SNP sequence = CGACTCTATGAGCAGCCACCG SNP = C/G SNP structure (UNICODE) = CCACGTAAGGSAAATCTCCTG Parent 1 SNP sequence = CCACGTAAGGCAAATCTCCTG Parent 2 SNP sequence = CCACGTAAGGGAAATCTCCTG SNP = C/T SNP structure (UNICODE) = CAGACAGCAGYTCTTAGTCGA Parent 1 SNP sequence = CAGACAGCAGCTCTTAGTCGA Parent 2 SNP sequence = CAGACAGCAGTTCTTAGTCGA SNP = A/T SNP structure (UNICODE) = CACTATACAGWTTGTAAAACC Parent 1 SNP sequence = CACTATACAGATTGTAAAACC Parent 2 SNP sequence = CACTATACAGTTTGTAAAACC SNP structure (UNICODE) = ATGACGCCATWATATAAATCA Parent 1 SNP sequence = ATGACGCCATAATATAAATCA Parent 2 SNP sequence = ATGACGCCATTATATAAATCA
Probe for Locus	bags12i02
Locus	k02044
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AATTGTGTGCGCTCTCTGTG Right 5' - TTCAAGCAGGACGAGTGATG
Sequence	AV921721
PCR size	399