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GrainGenes Marker Report: k02054

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Locus	k02054
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 274.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags11p11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = TaqI SNP = G/A SNP structure (UNICODE) = CCTTTGTTTCRACAACATGTC Parent 1 SNP sequence = CCTTTGTTTCGACAACATGTC Parent 2 SNP sequence = CCTTTGTTTCAACAACATGTC Recognized sequence for CAPs locus = TCGA SNP = T/A SNP structure (UNICODE) = CTTCTCATCGWGCAGAACAAG Parent 1 SNP sequence = CTTCTCATCGTGCAGAACAAG Parent 2 SNP sequence = CTTCTCATCGAGCAGAACAAG
Probe for Locus	bags11p11
Locus	k02054
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hexose transporter, putative [Arabidopsis thaliana] pir F96696 protein F1N21.12 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - CATCACACTCGGTACAAGCG Right 5' - CTTGGGAGGATATGCCTTGA
PCR size	421