Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02062

[Submit comment/correction]

Locus	k02062
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 56.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags13n11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/G SNP structure (UNICODE) = CCTGCAGAATSGACAAACTAT Parent 1 SNP sequence = CCTGCAGAATCGACAAACTAT Parent 2 SNP sequence = CCTGCAGAATGGACAAACTAT Recognized sequence for CAPs locus = GANTC
Probe for Locus	bags13n11
Locus	k02062
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60
Type	PCR
PCR primers	Left 5' - CTTTCATGCTGGACAGAGCA Right 5' - CAAGCAAGGAGCCACAGAG
Sequence	AV915197
PCR size	399