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GrainGenes Marker Report: k02070

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Locus	k02070
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 25.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags13d07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Bsp1286I SNP = G/C SNP structure (UNICODE) = TTCTGTTTGTSCTCCTGCTGC Parent 1 SNP sequence = TTCTGTTTGTGCTCCTGCTGC Parent 2 SNP sequence = TTCTGTTTGTCCTCCTGCTGC Recognized sequence for CAPs locus = GDGCHC
Probe for Locus	bags13d07
Locus	k02070
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein F12K11.7 [imported] - Arabidopsis thaliana gb AAF24811.1 F12K11.7 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CGTAGCAGATTTTTCCCTGC Right 5' - GGCGTACAACTCGTATGCAA
Sequence	AV834302
PCR size	428