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GrainGenes Marker Report: k02071

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Locus	k02071
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 94.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags13g08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/C SNP structure (UNICODE) = CCAAATGCTTSATATGAGCTT Parent 1 SNP sequence = CCAAATGCTTGATATGAGCTT Parent 2 SNP sequence = CCAAATGCTTCATATGAGCTT SNP = A/G SNP structure (UNICODE) = ATGCCGATCCRAAAGGGACAC Parent 1 SNP sequence = ATGCCGATCCAAAAGGGACAC Parent 2 SNP sequence = ATGCCGATCCGAAAGGGACAC SNP = C/G SNP structure (UNICODE) = AAAGGGACACSAAGCAGGCAA Parent 1 SNP sequence = AAAGGGACACCAAGCAGGCAA Parent 2 SNP sequence = AAAGGGACACGAAGCAGGCAA
Probe for Locus	bags13g08
Locus	k02071
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = mismatch binding protein Mus3 [Zea mays]
Type	PCR
PCR primers	Left 5' - ATATCCGTCGTTCCGTTCAC Right 5' - TCATGCAATGCTCTTCTGCT
Sequence	AV920327
PCR size	481