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GrainGenes Marker Report: k02101

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Locus	k02101
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 134.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags11o11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = GTCCTTTGCCRTCCTGCTCTT Parent 1 SNP sequence = GTCCTTTGCCGTCCTGCTCTT Parent 2 SNP sequence = GTCCTTTGCCATCCTGCTCTT SNP = C/T SNP structure (UNICODE) = CCCAGTGTCAYCGTTAAATTT Parent 1 SNP sequence = CCCAGTGTCACCGTTAAATTT Parent 2 SNP sequence = CCCAGTGTCATCGTTAAATTT SNP = A/C SNP structure (UNICODE) = CTAGATCTTGMGTTGGTTGGT Parent 1 SNP sequence = CTAGATCTTGAGTTGGTTGGT Parent 2 SNP sequence = CTAGATCTTGCGTTGGTTGGT
Probe for Locus	bags11o11
Locus	k02101
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0009G03.26 [Oryza sativa (japonica cultivar-group)] dbj BAB03626.1 P0009G03.26 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTGACACACGCACACACAC Right 5' - GTTGTGGTCTACGCCTTGGT
Sequence	AV917871
PCR size	412