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GrainGenes Marker Report: k02116

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Locus	k02116
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 121.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags14l13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/G SNP structure (UNICODE) = AAATGAGTAGSGACATGCCAG Parent 1 SNP sequence = AAATGAGTAGCGACATGCCAG Parent 2 SNP sequence = AAATGAGTAGGGACATGCCAG SNP = A/G SNP structure (UNICODE) = TAAGAAGGCARATAACTGGTA Parent 1 SNP sequence = TAAGAAGGCAAATAACTGGTA Parent 2 SNP sequence = TAAGAAGGCAGATAACTGGTA SNP = T/C SNP structure (UNICODE) = TACCCGCGGTYGCAAGCTCCT Parent 1 SNP sequence = TACCCGCGGTTGCAAGCTCCT Parent 2 SNP sequence = TACCCGCGGTCGCAAGCTCCT SNP structure (UNICODE) = GACAGAAAGAYGTTCATGGTT Parent 1 SNP sequence = GACAGAAAGATGTTCATGGTT Parent 2 SNP sequence = GACAGAAAGACGTTCATGGTT
Probe for Locus	bags14l13
Locus	k02116
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains EST AU031225(E61165)~nhp2-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACGTTTGCACGGTAAGCTA Right 5' - GGGTAAACCAACCAAGCAGA
Sequence	AV920582
PCR size	408