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GrainGenes Marker Report: k02145

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Locus	k02145
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 201.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags15j15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = TCTTCCTCGTYGTCGTCGAGA Parent 1 SNP sequence = TCTTCCTCGTCGTCGTCGAGA Parent 2 SNP sequence = TCTTCCTCGTTGTCGTCGAGA SNP = T/C SNP structure (UNICODE) = GAAGTACTTGYTCCTCTCGGC Parent 1 SNP sequence = GAAGTACTTGTTCCTCTCGGC Parent 2 SNP sequence = GAAGTACTTGCTCCTCTCGGC
Probe for Locus	bags15j15
Locus	k02145
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0506B12.23 [Oryza sativa (japonica cultivar-group)] dbj BAB89751.1 P0506B12.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCTCGCTAGTTTGGGGTAGA Right 5' - ACACAAATGTCGGGAGAAGG
Sequence	AV920793
PCR size	366