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GrainGenes Marker Report: k02146

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Locus	k02146
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 154.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags15k18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = CAAACCAGCARTGGGAAGCGA Parent 1 SNP sequence = CAAACCAGCAGTGGGAAGCGA Parent 2 SNP sequence = CAAACCAGCAATGGGAAGCGA SNP = A/G SNP structure (UNICODE) = GTTGACAAACRGTATAGCGTG Parent 1 SNP sequence = GTTGACAAACAGTATAGCGTG Parent 2 SNP sequence = GTTGACAAACGGTATAGCGTG SNP structure (UNICODE) = AACACACTGTRCGCTGAATAC Parent 1 SNP sequence = AACACACTGTGCGCTGAATAC Parent 2 SNP sequence = AACACACTGTACGCTGAATAC SNP = C/G SNP structure (UNICODE) = TCCCTATAATSAGTATGAAAC Parent 1 SNP sequence = TCCCTATAATCAGTATGAAAC Parent 2 SNP sequence = TCCCTATAATGAGTATGAAAC
Probe for Locus	bags15k18
Locus	k02146
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative vacuolar protein sorting-associated protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATATGCCTCACGAAACGAGG Right 5' - TGATGGCAGTACCCAAAACA
Sequence	AV920815
PCR size	367