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GrainGenes Marker Report: k02148

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Locus	k02148
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 246.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags16i19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = GCAGGCATGTKTTACGGCACT Parent 1 SNP sequence = GCAGGCATGTGTTACGGCACT Parent 2 SNP sequence = GCAGGCATGTTTTACGGCACT SNP = G/C SNP structure (UNICODE) = CGCTGCTGCGSCCAGAGCATC Parent 1 SNP sequence = CGCTGCTGCGGCCAGAGCATC Parent 2 SNP sequence = CGCTGCTGCGCCCAGAGCATC SNP = C/A SNP structure (UNICODE) = GCATCCTGAGMGAGGCAGGCC Parent 1 SNP sequence = GCATCCTGAGCGAGGCAGGCC Parent 2 SNP sequence = GCATCCTGAGAGAGGCAGGCC
Probe for Locus	bags16i19
Locus	k02148
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative hydoxyethylthiazole kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAGAGAGTCCACGCGAATTG Right 5' - GTGGTTACGTTAGGAGGGCA
Sequence	CA005091
PCR size	374