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GrainGenes Marker Report: k02151

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Locus	k02151
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 126
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags14j09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/G SNP structure (UNICODE) = ATGGTATAATKATTCTGTGAG Parent 1 SNP sequence = ATGGTATAATTATTCTGTGAG Parent 2 SNP sequence = ATGGTATAATGATTCTGTGAG Recognized sequence for CAPs locus = GANTC SNP = A/T SNP structure (UNICODE) = TCGGCGACCGWCTCCCAACCA Parent 1 SNP sequence = TCGGCGACCGACTCCCAACCA Parent 2 SNP sequence = TCGGCGACCGTCTCCCAACCA
Probe for Locus	bags14j09
Locus	k02151
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains similarity to sorting nexin~gene_id:MQJ2.4 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TACTGGTCTTGGATGCGACA Right 5' - GCGCCAAATCTGATAGCACT
Sequence	AV920560
PCR size	354