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GrainGenes Marker Report: k02157

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Locus	k02157
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 297.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags15j16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/C SNP structure (UNICODE) = GAGCGGAACCSGATATAAGCT Parent 1 SNP sequence = GAGCGGAACCGGATATAAGCT Parent 2 SNP sequence = GAGCGGAACCCGATATAAGCT SNP = T/C SNP structure (UNICODE) = GGCAGATCGAYGCGACCGGCT Parent 1 SNP sequence = GGCAGATCGATGCGACCGGCT Parent 2 SNP sequence = GGCAGATCGACGCGACCGGCT SNP = A/C SNP structure (UNICODE) = GTCACGCCGTMAACGACGCGT Parent 1 SNP sequence = GTCACGCCGTAAACGACGCGT Parent 2 SNP sequence = GTCACGCCGTCAACGACGCGT
Probe for Locus	bags15j16
Locus	k02157
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0004A17.3 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGCAGGTCGTGAGTCATCA Right 5' - AGAGACAAGGAGAGACCGAGG
Sequence	AV920794
PCR size	446