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GrainGenes Marker Report: k02160

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Locus	k02160
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 91.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags16j16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = T/C SNP structure (UNICODE) = TAGTACTCTAYAGGATTTGAG Parent 1 SNP sequence = TAGTACTCTATAGGATTTGAG Parent 2 SNP sequence = TAGTACTCTACAGGATTTGAG SNP structure (UNICODE) = ATTAGCAGGGYTATCAAATTG Parent 1 SNP sequence = ATTAGCAGGGTTATCAAATTG Parent 2 SNP sequence = ATTAGCAGGGCTATCAAATTG SNP = A/T SNP structure (UNICODE) = ATAAAGAGAAWTTCCTCCAGA Parent 1 SNP sequence = ATAAAGAGAAATTCCTCCAGA Parent 2 SNP sequence = ATAAAGAGAATTTCCTCCAGA
Probe for Locus	bags16j16
Locus	k02160
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TACAGGTGCACAGCAAAAGG Right 5' - CTTCGTCGTGGGATCCTAAA
Sequence	AV834391
PCR size	392