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GrainGenes Marker Report: k02180

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Locus	k02180
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 278.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags15i06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = C/T SNP structure (UNICODE) = TCGAACTCCTYTGGTCGCTAG Parent 1 SNP sequence = TCGAACTCCTCTGGTCGCTAG Parent 2 SNP sequence = TCGAACTCCTTTGGTCGCTAG SNP = A/G SNP structure (UNICODE) = ACTGCAGGACRAGCTGCTTCA Parent 1 SNP sequence = ACTGCAGGACAAGCTGCTTCA Parent 2 SNP sequence = ACTGCAGGACGAGCTGCTTCA SNP = T/G SNP structure (UNICODE) = CTGCTCCTGGKACTGCAGGAC Parent 1 SNP sequence = CTGCTCCTGGTACTGCAGGAC Parent 2 SNP sequence = CTGCTCCTGGGACTGCAGGAC SNP structure (UNICODE) = AGTAGATTTTKCAGTTCAGAT Parent 1 SNP sequence = AGTAGATTTTTCAGTTCAGAT Parent 2 SNP sequence = AGTAGATTTTGCAGTTCAGAT SNP structure (UNICODE) = CAGCGCGTAGKTGTTGATCTG Parent 1 SNP sequence = CAGCGCGTAGTTGTTGATCTG Parent 2 SNP sequence = CAGCGCGTAGGTGTTGATCTG SNP = C/G SNP structure (UNICODE) = CGCCCTATCCSACGGCCAACA Parent 1 SNP sequence = CGCCCTATCCCACGGCCAACA Parent 2 SNP sequence = CGCCCTATCCGACGGCCAACA SNP = A/C SNP structure (UNICODE) = ACTCTCAATCMCCAAGGGCCA Parent 1 SNP sequence = ACTCTCAATCACCAAGGGCCA Parent 2 SNP sequence = ACTCTCAATCCCCAAGGGCCA
Probe for Locus	bags15i06
Locus	k02180
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCAACATTTGGGAAGGCTAA Right 5' - ACCATTGTGAAACCCCCTTT
Sequence	AV920767
PCR size	392