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GrainGenes Marker Report: k02198

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Locus	k02198
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 40.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags14h12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = T/A SNP structure (UNICODE) = CGACGGGGAAWCATTTGAAGG Parent 1 SNP sequence = CGACGGGGAATCATTTGAAGG Parent 2 SNP sequence = CGACGGGGAAACATTTGAAGG SNP structure (UNICODE) = CTTCCTTTGGWTTGGTTCAAG Parent 1 SNP sequence = CTTCCTTTGGTTTGGTTCAAG Parent 2 SNP sequence = CTTCCTTTGGATTGGTTCAAG SNP = A/G SNP structure (UNICODE) = ACAAGAGTCARAACTGCATCC Parent 1 SNP sequence = ACAAGAGTCAAAACTGCATCC Parent 2 SNP sequence = ACAAGAGTCAGAACTGCATCC
Probe for Locus	bags14h12
Locus	k02198
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phosphoglucomutase [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - GCCAGGCTTTGCAAATTAGA Right 5' - CAAGCTCGTGAAGTTAATGGC
Sequence	BJ467979
PCR size	438