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GrainGenes Marker Report: k02204

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Locus	k02204
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags15i11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = CGGTGGCCGCRCTCCCTGTAC Parent 1 SNP sequence = CGGTGGCCGCACTCCCTGTAC Parent 2 SNP sequence = CGGTGGCCGCGCTCCCTGTAC Recognized sequence for CAPs locus = GCGC
Probe for Locus	bags15i11
Locus	k02204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Argonaute 2 CG7439-PB [Drosophila melanogaster] gb AAF49619.2 CG7439-PB [Drosophila melanogaster]
Type	PCR
PCR primers	Left 5' - GAATGGCGTGGATCTCAAGT Right 5' - GCCATTGAGGAACAAAAGGA
Sequence	AV834360
PCR size	368