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GrainGenes Marker Report: k02212

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Locus	k02212
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 101.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags17i04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/C SNP structure (UNICODE) = TGCAACAGATSCGTCTAACTT Parent 1 SNP sequence = TGCAACAGATGCGTCTAACTT Parent 2 SNP sequence = TGCAACAGATCCGTCTAACTT Recognized sequence for CAPs locus = GATC
Probe for Locus	bags17i04
Locus	k02212
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ESTs C27722(C52692),AU058088(S0509) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TGCAGTTCACTGTAGTCGCC Right 5' - CATCCTTGCTATCTGGGCAT
Sequence	AV918030
PCR size	356