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GrainGenes Marker Report: k02217

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Locus	k02217
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 342.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags18e18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/G SNP structure (UNICODE) = CCAGTTGCCCSCACGCTGCAG Parent 1 SNP sequence = CCAGTTGCCCCCACGCTGCAG Parent 2 SNP sequence = CCAGTTGCCCGCACGCTGCAG SNP = G/T SNP structure (UNICODE) = TTGAGCAGATKGTCAGTGTTT Parent 1 SNP sequence = TTGAGCAGATGGTCAGTGTTT Parent 2 SNP sequence = TTGAGCAGATTGTCAGTGTTT SNP = T/A SNP structure (UNICODE) = CTGTAGGCAAWGTGTGGATGT Parent 1 SNP sequence = CTGTAGGCAATGTGTGGATGT Parent 2 SNP sequence = CTGTAGGCAAAGTGTGGATGT
Probe for Locus	bags18e18
Locus	k02217
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative CTP synthase [Oryza sativa (japonica cultivar-group)] dbj BAB39119.1 putative CTP synthase [Oryza sativa (japonica cultivar-group)
Type	PCR
PCR primers	Left 5' - GCCTGGAACAAGAGGAAATG Right 5' - GAGAAGGAGTGAAGGAGGGG
Sequence	AV922459
PCR size	461