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GrainGenes Marker Report: k02238

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Locus	k02238
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 211
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags17p10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = PstI SNP = G/C SNP structure (UNICODE) = CATCAGGCATSTGCAGATAGT Parent 1 SNP sequence = CATCAGGCATGTGCAGATAGT Parent 2 SNP sequence = CATCAGGCATCTGCAGATAGT Recognized sequence for CAPs locus = CTGCAG
Probe for Locus	bags17p10
Locus	k02238
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative actin-depolymerizing factor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTTTGGGATACACCAGCCAT Right 5' - GAGAACCAAACGACGAGAGC
Sequence	AV918126
PCR size	463