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GrainGenes Marker Report: k02242

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Locus	k02242
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 130
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags18h01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = GAAACAGATTKTTAAAAGATT Parent 1 SNP sequence = GAAACAGATTGTTAAAAGATT Parent 2 SNP sequence = GAAACAGATTTTTAAAAGATT SNP = T/A SNP structure (UNICODE) = CGATTTAGTAWTTCCCCTGGT Parent 1 SNP sequence = CGATTTAGTATTTCCCCTGGT Parent 2 SNP sequence = CGATTTAGTAATTCCCCTGGT SNP = C/A SNP structure (UNICODE) = ACACACAAAAMAGAAAACAAC Parent 1 SNP sequence = ACACACAAAACAGAAAACAAC Parent 2 SNP sequence = ACACACAAAAAAGAAAACAAC
Probe for Locus	bags18h01
Locus	k02242
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein T23E23.20 [imported] - Arabidopsis thaliana gb AAF87145.1 T23E23.20 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TACCTTTACCAAACGCCCAA Right 5' - TACACCAACCTCATGTCCCA
Sequence	AV922501
PCR size	389