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GrainGenes Marker Report: k02276

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Locus
k02276
Type
SNP
Chromosome
1H
Map
Hv-HNxH602-1H102.3
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
bags18d19
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 24 ]
SNP = A/G
SNP structure (UNICODE) = ATGGAACAGCRCTGAGCATTT
Parent 1 SNP sequence = ATGGAACAGCACTGAGCATTT
Parent 2 SNP sequence = ATGGAACAGCGCTGAGCATTT
SNP = C/T
SNP structure (UNICODE) = ACAGAACTTTYTGCACAACAG
Parent 1 SNP sequence = ACAGAACTTTCTGCACAACAG
Parent 2 SNP sequence = ACAGAACTTTTTGCACAACAG
SNP = C/A
SNP structure (UNICODE) = GCAAAGAGATMAAATACAATA
Parent 1 SNP sequence = GCAAAGAGATCAAATACAATA
Parent 2 SNP sequence = GCAAAGAGATAAAATACAATA
SNP = C/G
SNP structure (UNICODE) = TTACTTACAGSTCTCTTTCCA
Parent 1 SNP sequence = TTACTTACAGCTCTCTTTCCA
Parent 2 SNP sequence = TTACTTACAGGTCTCTTTCCA
SNP = G/A
SNP structure (UNICODE) = GGACTTTATCRTTAACCGGGC
Parent 1 SNP sequence = GGACTTTATCGTTAACCGGGC
Parent 2 SNP sequence = GGACTTTATCATTAACCGGGC
SNP = T/C
SNP structure (UNICODE) = GATCTGAATAYTAGCATACTC
Parent 1 SNP sequence = GATCTGAATATTAGCATACTC
Parent 2 SNP sequence = GATCTGAATACTAGCATACTC


Probe for Locus
bags18d19
Locus
k02276
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative alpha-mannosidase [Oryza sativa (japonica cultivar-group)] gb AAL73069.1 Putative alpha-mannosidase [Oryza sativa]
Type
PCR
PCR primers
Left 5' - GCATCGGTTAGTTTTCTGGC
Right 5' - TCCTCATGACTGATCTCCCC
Sequence
AV834608
PCR size
409